Was anyone trying to sell you the “wonderful” idea of running FCoE between Data Centers instead of FC-over-DWDM or FCIP? Sounds great ... until you figure out it won’t work. Ever ... or at least until switch vendors drastically increase interface buffers on the 10GE ports.
FCoE requires lossless Ethernet between its “routers” (Fiber Channel Forwarders – see Multihop FCoE 101 for more details), which can only be provided with Data Center Bridging (DCB) standards, specifically Priority Flow Control (PFC). However, if you want to have lossless Ethernet between two points, every layer-2 (or higher) device in the path has to support DCB, which probably rules out any existing layer-2+ solution (including Carrier Ethernet, pseudowires, VPLS or OTV). The only option is thus bridging over dark fiber or a DWDM wavelength.